- frode.berven@uib.no
- Phone number
- +47 99163866
- +47 55586743
- Visitor address
-
Jonas Lies vei 91
5009 Bergen - Postal address
-
P.O. Box 7804NO-5020 BergenNorway
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Research groups
Research
Dr. Frode S. Berven (Ph.D.) is the head of the Department of Biomedicine at the University of Bergen.
Berven completed his Masters degree at Department of Molecular Biologi, UiB, Ph.D. in bioinformatics at the Department of Informatics, UiB, and post doctor at the Institute of Medicine, UiB, and at the Proteomics Platform at the Broad Institute of MIT and Harvard.
He is working in the field of mass spectrometry based quantitative proteomics with emphaisis on biomarker disocovery and verification in cerebrospinal fluid of patients with multiple sclerosis.
Publications
2017
- Fekadu Yadetie; Eystein Oveland; Anne Marie Simonne Døskeland et al. (2017). Quantitative proteomics analysis reveals perturbation of lipid metabolic pathways in the liver of Atlantic cod (Gadus morhua) treated with PCB 153. (external link)
- Ann Cathrine Kroksveen; Astrid Guldbrandsen; Marc Vaudel et al. (2017). In-depth cerebrospinal fluid quantitative proteome and deglycoproteome analysis: presenting a comprehensive picture of pathways and processes affected by multiple sclerosis. (external link)
- Rakel Brendsdal Forthun; Elise Aasebø; Josef Daiel Rasinger et al. (2017). Phosphoprotein DIGE profiles reflect blast differentiation, cytogenetic risk stratification, FLT3/NPM1 mutations and therapy response in acute myeloid leukaemia. (external link)
- Annette Brenner; Elise Aasebø; Maria Hernandez-Valladares et al. (2017). Rethinking the role of osteopontin in human acute myeloid leukemia. (external link)
- Eystein Oveland; Agnes Elisabeth Nystad; Frode Berven et al. (2017). 1,25-Dihydroxyvitamin-D3 induces brain proteomic changes in cuprizone mice during remyelination involving calcium proteins. (external link)
- Kenneth Verheggen; Helge Ræder; Frode Berven et al. (2017). Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows. (external link)
- Gyrid Nygaard; Lars Herfindal; Kathrine Sivertsen Åsrud et al. (2017). Epac1-deficient mice have bleeding phenotype and thrombocytes with decreased GPIbβ expression. (external link)
- Fekadu Yadetie; Marta Eide; Eystein Oveland et al. (2017). Integrative transcriptome and proteome analysis reveals perturbation of lipid metabolic pathways in the liver of Atlantic cod (Gadus morhua) treated with PCB 153. (external link)
- Alvhild Alette Bjørkum; Eystein Oveland; Linda Elin Birkhaug Stuhr et al. (2017). Fast hyperbaric decompression after heliox saturation altered the brain proteome in rats. (external link)
- Theodora Ioana Paunas; Kenneth Finne; Sabine Maria Leh et al. (2017). Glomerular abundance of complement proteins characterized by proteomic analysis of laser-captured microdissected glomeruli associates with progressive disease in IgA nephropathy. (external link)
- Maria Hernandez-Valladares; Marc Vaudel; Frode Selheim et al. (2017). Proteogenomics approaches for studying cancer biology and their potential in the identification of acute myeloid leukemia biomarkers. (external link)
2016
- Ragnhild Reehorst Lereim; Eystein Oveland; Y. Xiao et al. (2016). The Brain Proteome of the Ubiquitin Ligase Peli1 Knock-Out Mouse during Experimental Autoimmune Encephalomyelitis. (external link)
- Astrid Guldbrandsen; Yehia Mohamed Mokhtar Farag; Ann Cathrine Kroksveen et al. (2016). CSF-PR 2.0: an interactive literature guide to quantitative cerebrospinal fluid mass spectrometry data from neurodegenerative disorders. (external link)
- Kenneth Finne; Hans-Peter Marti; Sabine Maria Leh et al. (2016). Proteomic Analysis of Minimally Damaged Renal Tubular Tissue from Two-Kidney-One-Clip Hypertensive Rats Demonstrates Extensive Changes Compared to Tissue from Controls. (external link)
- Vegard Tveit; Frode Berven; Astrid Guldbrandsen et al. (2016). Glycopeptide analysis and glycan structure inference from mass spectrometry data-Investigating the potential of computational glycan structure analysis in biomedical research. (external link)
- Maria Hernandez-Valladares; Elise Aasebø; Olav Mjaavatten et al. (2016). Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients. (external link)
- Elise Aasebø; Olav Mjaavatten; Marc Vaudel et al. (2016). Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows. (external link)
- Elise Aasebø; Rakel Brendsdal Forthun; Frode Berven et al. (2016). Global cell proteome profiling, phospho-signaling and quantitative proteomics for identification of new biomarkers in acute myeloid leukemia patients. (external link)
- Marc Vaudel; Harald Barsnes; Rolf Bjerkvig et al. (2016). Practical considerations for omics experiments in biomedical sciences. (external link)
- Jill Anette Opsahl; Marc Vaudel; Astrid Guldbrandsen et al. (2016). Label-free analysis of human cerebrospinal fluid addressing various normalization strategies and revealing protein groups affected by multiple sclerosis. (external link)
- Kenneth Verheggen; Lennart Martens; Frode Berven et al. (2016). Database Search Engines: Paradigms, Challenges and Solutions.. (external link)
- Fekadu Yadetie; Marta Eide; Eystein Oveland et al. (2016). Integrated analysis of transcriptome and proteome reveals perturbation of lipid metabolic pathways in the liver of Atlantic cod (Gadus morhua) treated with the persistent organic pollutant PCB 153. (external link)
- Odd Andre Karlsen; Fekadu Yadetie; Marta Eide et al. (2016). Integrative -omics analyses reveal perturbation of lipid metabolic pathways in the liver of Atlantic cod (Gadus morhua) exposed to the persistent organic pollutant PCB 153. (external link)
- Astrid Guldbrandsen; Frode Berven; Ann Cathrine Kroksveen et al. (2016). Proteome and deglycopeptide analyses of neurologically healthy and multiple sclerosis affected cerebrospinal fluid: Mass spectrometry experiments, literature mining and data sharing. (external link)
- Fekadu Yadetie; Silje Bjørneklett; Hilde Kristin Garberg et al. (2016). Quantitative analyses of the hepatic proteome of methylmercury-exposed Atlantic cod (Gadus morhua) suggest oxidative stress-mediated effects on cellular energy metabolism. (external link)
- Luis Francisco Hernandez Sanchez; Elise Aasebø; Frode Selheim et al. (2016). Systemic Analysis of Regulated Functional Networks. (external link)
- Marc Vaudel; Harald Barsnes; Helge Ræder et al. (2016). Using Proteomics Bioinformatics Tools and Resources in Proteogenomic Studies. (external link)
- Elise Aasebø; Frode Berven (2016). Mass spectrometry-based proteome quantification in leukemic cells from acute myeloid leukemia patients. (external link)
- Marc Vaudel; Kenneth Verheggen; Attila Csordas et al. (2016). Exploring the potential of public proteomics data. (external link)
- Maria Hernandez-Valladares; Elise Aasebø; Frode Selheim et al. (2016). Selecting Sample Preparation Workflows for Mass Spectrometry-Based Proteomic and Phosphoproteomic Analysis of Patient Samples with Acute Myeloid Leukemia. (external link)
- Elise Aasebø; Frode Berven; Frode Selheim et al. (2016). Interpretation of Quantitative Shotgun Proteomic Data. (external link)
- Astrid Guldbrandsen; Harald Barsnes; Ann Cathrine Kroksveen et al. (2016). A Simple Workflow for Large Scale Shotgun Glycoproteomics. (external link)
- Thilo Muth; Erdmann Rapp; Frode Berven et al. (2016). Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics. (external link)
- Ragnhild Reehorst Lereim; Eystein Oveland; Frode Berven et al. (2016). Visualization, Inspection and Interpretation of Shotgun Proteomics Identification Results. (external link)
2022
- Lasse Neset; Gracious Takayidza; Frode Steingrimsen Berven et al. (2022). Comparing Efficiency of Lysis Buffer Solutions and Sample Preparation Methods for Liquid Chromatography–Mass Spectrometry Analysis of Human Cells and Plasma. (external link)
- Paunas Flavia Teodora; Kenneth Finne; Sabine Leh et al. (2022). Proteomic signature of tubulointerstitial tissue predicts prognosis in IgAN. (external link)
- Ozlem Yilmaz; Anders Mangor-Jensen; Torstein Harboe et al. (2022). Quantitative proteome profiling reveals molecular hallmarks of egg quality in Atlantic halibut: impairments of transcription and protein folding impede protein and energy homeostasis during early development. (external link)
- Chiara Cappelletti; Anna Maria Eriksson; Ina Skaara Brorson et al. (2022). Quantitative proteomics reveals protein dysregulation during T cell activation in multiple sclerosis patients compared to healthy controls. (external link)
2013
- Carol L. Nilsson; Frode Berven; Frode Selheim et al. (2013). Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium. (external link)
- Kenneth Finne; Trude Skogstrand; Olav Tenstad et al. (2013). Proteomic analysis of outer and juxtamedullary cortex of non-clipped kidneys in 2K1C hypertensive rats. (external link)
- Ann Cathrine Kroksveen; Elise Aasebø; Heidrun Vethe et al. (2013). Discovery and initial verification of differentially abundant proteins between multiple sclerosis patients and controls using iTRAQ and SID-SRM. (external link)
- Magnus Foldal Berle; Ann Cathrine Kroksveen; Hilde Kristin Garberg et al. (2013). Quantitative proteomics comparison of arachnoid cyst fluid and cerebrospinal fluid collected perioperatively from arachnoid cyst patients. (external link)
- Johan Malm; T.E. Fehninger; Pia Danmyr et al. (2013). Developments in biobanking workflow standardization providing sample integrity and stability. (external link)
- Charlotte E. Teunissen; Til Menge; Ayse Altintas et al. (2013). Consensus definitions and application guidelines for control groups in cerebrospinal fluid biomarker studies in multiple sclerosis. (external link)
2005
- Frode Berven; Harald B Jensen; Johan Lillehaug (2005). Analysing the outer membrane and subproteome of Methylococcus capsulatus (Bath) using proteomics and bioinformatics. (external link)
- Odd Andre Karlsen; Linda Ramsevik; Live J. Bruseth et al. (2005). Characterisation of a prokaryotic hemerythrin from the methanotrophic bacterium Methylococcus capsulatus (Bath). (external link)
2006
- Harald G Wiker; Hiwa Målen; Frode Berven et al. (2006). Late breaker: Revealing the secreted proteome of Mycobacterium tuberculosis H37Rv. (external link)
- Frode Berven; Kristian Flikka; Magnus Foldal Berle et al. (2006). Proteomic-based biomarker discovery with emphasis on cerebrospinal fluid and multiple sclerosis. (external link)
- Frode Berven; Odd Andre Karlsen; Anne Hege Straume et al. (2006). Analysing the outer membrane subproteome of Methylococcus capsulatus (Bath) using proteomics and novel biocomputing tools. (external link)
- Frode Berven; Hiwa Målen; Kari Espolin Fladmark et al. (2006). Comparing the protein identifications obtained using two-dimensional gel electrophoresis or liquid chromatography mass spectrometry on the secreted proteome of Mycobacterium tuberculosis. (external link)
- Ingvild Aukrust; Lasse Evensen; Hanne Hollås et al. (2006). Engineering, biophysical characterisation and binding properties of a soluble mutant form of annexin A2 domain IV that adopts a partially folded conformation. (external link)
2018
- Mingxing Yang; Maxie Kohler; Tina Heyder et al. (2018). Proteomic profiling of lung immune cells reveals dysregulation of phagocytotic pathways in female-dominated molecular COPD phenotype. (external link)
- Mingxing Yang; Maxie Kohler; Tina Heyder et al. (2018). Long-term smoking alters abundance of over half of the proteome in bronchoalveolar lavage cell in smokers with normal spirometry, with effects on molecular pathways associated with COPD. (external link)
- Ina Nepstad; Kimberley Joanne Hatfield; Elise Aasebø et al. (2018). Two acute myeloid leukemia patient subsets are identified based on the constitutive PI3K-Akt-mTOR signaling of their leukemic cells; a functional, proteomic and transcriptomic comparison. (external link)
- Mari Jacobsen; Frode Berven; Astrid Guldbrandsen (2018). Development and Use of Mass Spectrometry Based Quantitative Proteomics Assays for Multiple Sclerosis Biomarker Candidates. (external link)
- Tone Berge; Anna Eriksson; Ina Skaara Brorson et al. (2018). Proteomic profiling of CD4+ and CD8+ T cells from multiple sclerosis patients and healthy controls. (external link)
- Tone Berge; Ina Skaara Brorson; Einar August Høgestøl et al. (2018). Proteomic profiling of CD4+ and CD8+ T cells from multiple sclerosis patients and healthy controls. (external link)
- Anna Eriksson; Ina Skaara Brorson; Einar August Høgestøl et al. (2018). Proteomic profiling of CD4+ T cells from MS patients show increased activity of T cell activation pathways (compared to healthy controls). (external link)
- Tone Berge; Anna Eriksson; Ina Skaara Brorson et al. (2018). Proteomic profiling of T cells from multiple sclerosis patients and healthy controls. (external link)
2015
- Ann Cathrine Kroksveen; Jill Anette Opsahl; Astrid Guldbrandsen et al. (2015). Cerebrospinal fluid proteomics in multiple sclerosis. (external link)
- Péter Horvatovich; Ákos Végvári; Justin Saul et al. (2015). In vitro transcription/translation system: A versatile tool in the search for missing proteins. (external link)
- Xiangdong Wang; Yong Zhang; Carol L. Nilsson et al. (2015). Association of chromosome 19 to lung cancer genotypes and phenotypes. (external link)
- Eystein Oveland; Thilo Muth; Erdmann Rapp et al. (2015). Viewing the proteome: How to visualize proteomics data?. (external link)
- Åsa M. Wheelock; Linda Paulson; Jan-Eric Litton et al. (2015). The EuPA Biobank Initiative: Meeting the future challenges of biobanking in proteomics & systems medicine. (external link)
- Ann Cathrine Kroksveen; Jacob D. Jaffe; Elise Aasebø et al. (2015). Quantitative proteomics suggests decrease in the secretogranin-1 cerebrospinal fluid levels during the disease course of multiple sclerosis. (external link)
- Marc Vaudel; Julia M. Burkhart; René P. Zahedi et al. (2015). PeptideShaker enables reanalysis of MS-derived proteomics data sets. (external link)
- Carol L. Nilsson; Ekaterina Mostovenko; Cheryl F. Lichti et al. (2015). Use of ENCODE resources to characterize novel proteoforms and missing proteins in the human proteome. (external link)
- Xiangdong Wang; Yong Zhang; Carol L. Nilsson et al. (2015). Erratum to: Association of chromosome 19 to lung cancer genotypes and phenotypes. (external link)
- Yehia Mohamed Mokhtar Farag; Frode Berven; Inge Jonassen et al. (2015). Distributed and interactive visual analysis of omics data. (external link)
2019
- Annette Brenner; Elise Aasebø; Maria Hernandez-Valladares et al. (2019). The capacity of long-term in vitro proliferation of acute myeloid leukemia cells supported only by exogenous cytokines is associated with a patient subset with adverse outcome. (external link)
- Tone Berge; Anna Eriksson; Ina Skaara Brorson et al. (2019). Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls. (external link)
- Elise Aasebø; Maria Hernandez-Valladares; Frode Selheim et al. (2019). Proteomic profiling of primary human acute myeloid leukemia cells does not reflect their constitutive release of soluble mediators. (external link)
- Maria Hernandez-Valladares; Rebecca Wangen; Frode Berven et al. (2019). Protein post-translational modification crosstalk in acute myeloid leukemia calls for action. (external link)
- Astrid Guldbrandsen; Yehia Mohamed Mokhtar Farag; Ragnhild Reehorst Lereim et al. (2019). Essential Features and Use Cases of the Cerebrospinal Fluid Proteome Resource (CSF-PR). (external link)
- Elise Aasebø; Frode Berven; Sushma Bartaula-Brevik et al. (2019). Proteome and phosphoproteome changes associated with prognosis in acute myeloid leukemia. (external link)
- Tone Berge; Anna Eriksson; Ina S Brorson et al. (2019). Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls.. (external link)
- Rushdy Ahmad; Liangxia Xie; Margaret Pyle et al. (2019). A rapid triage test for active pulmonary tuberculosis in adult patients with persistent cough. (external link)
- Paunas Flavia Teodora; Kenneth Finne; Sabine Maria Leh et al. (2019). Characterization of glomerular extracellular matrix in IgA nephropathy by proteomic analysis of laser-captured microdissected glomeruli. (external link)
- Yanli Zhang-James; Marc Vaudel; Olav Mjaavatten et al. (2019). Effect of disease-associated SLC9A9 mutations on protein–protein interaction networks: implications for molecular mechanisms for ADHD and autism. (external link)
- Bram Burger; Ragnhild Reehorst Lereim; Frode Berven et al. (2019). Detecting single amino acids and small peptides by combining isobaric tags and peptidomics. (external link)
- Ina Nepstad; Kimberley Joanne Hatfield; Ida Sofie Grønningsæter et al. (2019). Effects of insulin and pathway inhibitors on the PI3K-Akt-mTOR phosphorylation profile in acute myeloid leukemia cells.. (external link)
2003
- Frode Berven; Odd Andre Karlsen; Colin Murrell et al. (2003). Multiple polypeptide forms observed in two-dimensional gels of Methylococcus capsulatus (Bath) polypeptides are generated during the separation procedure. (external link)
- Frode Berven; Odd Andre Karlsen; Colin Murrell et al. (2003). Multiple polypeptide forms observed in twodimensional gels of Methylococcus capsulatus (Bath)polypeptides are generated during the separation procedure. (external link)
- Odd Andre Karlsen; Frode Berven; Øivind Larsen et al. (2003). Identification of the ORF upstream of MopE in Methylococcus capsulatus. (external link)
- Frode Berven; Odd Andre Karlsen; Anne Fjellbirkeland et al. (2003). Proteome studies on the methanotrophic bacterium Methylococcus capsulatus (Bath). (external link)
- Odd Andre Karlsen; Frode Berven; Øivind Larsen et al. (2003). Differential expression in sMMO and pMMO producing cells of Methylococcus capsulatus (Bath). (external link)
- Odd Andre Karlsen; Frode Berven; Grasham Stafford et al. (2003). The surface-associated and secreted MopE protein of Methylococcus capsulatus (Bath) responds to changes in the concentration of copper in the growth medium. (external link)
- Odd Andre Karlsen; Frode Berven; Live Janicke Bruseth et al. (2003). The expression of the surface associated MopE protein of Methylococcus capsulatus (Bath) is regulated by the concentration of copper in the growth medium. (external link)
2010
- Frode Berven; Rushdy Ahmad; Karl R. Clouser et al. (2010). Optimizing performance of glycopeptide capture for plasma proteomics. (external link)
- Charlotte E. Teunissen; Axel Petzold; Jeffrey L. Bennett et al. (2010). A consensus protocol for the standardisation of cerebrospinal fluid collection and biobanking. (external link)
- Tarja Anniki Rajalahti Kvalheim; Ann Cathrine Kroksveen; Reidar Arneberg et al. (2010). A multivariate approach to reveal biomarker signatures for disease classification: application to mass spectral profiles of cerebrospinal fluid from patients with multiple sclerosis. (external link)
- Magnus Foldal Berle; Knut Wester; Rune Johan Ulvik et al. (2010). Arachnoid cysts do not contain cerebrospinal fluid: A comparative chemical analysis of arachnoid cyst fluid and cerebrospinal fluid in adults. (external link)
- Charlotte Teunissen; HT Tumani; JL Bennett et al. (2010). Short commentary on 'a consensus protocol for the standardization of cerebrospinal fluid collection and biobanking'. (external link)
2021
- Hanne Røberg-Larsen; Elsa Lundanes; Tuula Anneli Nyman et al. (2021). Liquid chromatography, a key tool for the advancement of single-cell omics analysis. (external link)
- Ellen Færgestad Mosleth; Christian Alexander Vedeler; Kristian Hovde Liland et al. (2021). Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis. (external link)
- Ida Sofie Grønningsæter; Håkon Reikvam; Elise Aasebø et al. (2021). Effects of the autophagy‐inhibiting agent chloroquine on acute myeloid leukemia cells; characterization of patient heterogeneity. (external link)
- Alvhild Alette Bjørkum; Ana Carrasco Duran; Frode Steingrimsen Berven et al. (2021). Human blood serum proteome changes after 6 hours of sleep deprivation at night. (external link)
- Justin Vareecal Joseph; Capucine R. Magaut; Simon Humberto Storevik et al. (2021). TGF-β promotes microtube formation in glioblastoma through thrombospondin 1. (external link)
- Elise Aasebø; Annette Brenner; Maria Hernandez-Valladares et al. (2021). Patient Heterogeneity in Acute Myeloid Leukemia: Leukemic Cell Communication by Release of Soluble Mediators and Its Effects on Mesenchymal Stem Cells. (external link)
- Elise Aasebø; Annette Brenner; Maria Hernandez-Valladares et al. (2021). Proteomic Characterization of Spontaneous Stress-Induced In Vitro Apoptosis of Human Acute Myeloid Leukemia Cells; Focus on Patient Heterogeneity and Endoplasmic Reticulum Stress. (external link)
- Elise Aasebø; Annette Brenner; Maria Hernandez-Valladares et al. (2021). Proteomic comparison of bone marrow derived osteoblasts and mesenchymal stem cells. (external link)
- Elise Aasebø; Annette Brenner; Even Birkeland et al. (2021). The constitutive extracellular protein release by acute myeloid leukemia cells—A proteomic study of patient heterogeneity and its modulation by mesenchymal stromal cells. (external link)
- Eystein Oveland; Intakhar Ahmad; Ragnhild Reehorst Lereim et al. (2021). Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis. (external link)
- Maria Hernandez-Valladares; Rebecca Wangen; Elise Aasebø et al. (2021). Proteomic studies of primary acute myeloid leukemia cells derived from patients before and during disease-stabilizing treatment based on all-trans retinoic acid and valproic acid. (external link)
2011
- Marc Vaudel; Harald Barsnes; Frode Berven et al. (2011). SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches. (external link)
- Atif Kamil; Knut Falk; Animesh Sharma et al. (2011). A monoclonal antibody distinguishes between two IgM heavy chain isotypes in Atlantic salmon and brown trout: Protein characterization, 3D modeling and epitope mapping. (external link)
- Ann Cathrine Kroksveen; Jill Anette Opsahl; Thin Thin Aye et al. (2011). Proteomics of human cerebrospinal fluid: Discovery and verification of disease biomarker candidates in neurodegenerative diseases using quantitative proteomics. (external link)
- Elise Aasebø; Frode Berven; Frode Selheim (2011). A proteomics study of Cerebrospinal fluid in relation to biomarker discovery and verification in Multiple Sclerosis, with emphasis on the effect of pre-analytical factors. (external link)
- Yngvild Bjørlykke; Frode Berven; Frode Selheim (2011). Proteomics in Cerebrospinal fluid: Finding proteins highly enriched in CSF, proteins influenced by the rostro-caudal gradient, and biomarker verification in Multiple Sclerosis. (external link)
- Magnus Arntzen; Christian Koehler; Harald Barsnes et al. (2011). IsobariQ: Software for isobaric quantitative proteomics using IPTL, iTRAQ and TMT. (external link)
- Vincent Eijsink; Frode Berven (2011). The field of proteomics in Norway. (external link)
- Harald Barsnes; Marc Vaudel; Niklaas Colaert et al. (2011). compomics-utilities: an open-source Java library for computational proteomics. (external link)
- Magnus Arntzen; Christian Koehler; Harald Barsnes et al. (2011). IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT. (external link)
- Odd Andre Karlsen; Frode Berven; Harald B Jensen et al. (2011). METHANOTROPH OUTER MEMBRANE PREPARATION. (external link)
- Odd Andre Karlsen; Frode Berven; June Iren Larsen| Bagstevold et al. (2011). Methylococcus capsulatus (Bath): From Genome to Protein Function, and Vice Versa. (external link)
- Magnus Foldal Berle; Ann Cathrine Kroksveen; Øystein Haaland et al. (2011). Protein profiling reveals inter-individual protein homogeneity of arachnoid cyst fluid and high qualitative similarity to cerebrospinal fluid. (external link)
2002
- Ivar Hordvik; Frode Berven; Stein Tore Solem et al. (2002). Analysis of two IgM isotypes in Atlantic salmon and brown trout. (external link)
- Frode Berven; Odd Andre Karlsen; Harald B Jensen (2002). Initial proteome studies on Methylococcus capsulatus (Bath). (external link)
- Anne Fjellbirkeland; Odd Andre Karlsen; Frode Berven et al. (2002). Characterization of copper-repressible extracellular protein of Methylococcus capsulatus (Bath). (external link)
- Frode Berven; Odd Andre Karlsen; Harald B Jensen (2002). Initial proteome studies of Methylococcus capsulatus (Bath). (external link)
2020
- Elise Aasebø; Frode Berven; Sushma Bartaula-Brevik et al. (2020). Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia. (external link)
- Astrid Guldbrandsen; Ragnhild Reehorst Lereim; Mari Jacobsen et al. (2020). Development of robust targeted proteomics assays for cerebrospinal fluid biomarkers in multiple sclerosis. (external link)
- Maria Hernandez-Valladares; Elise Aasebø; Frode Berven et al. (2020). Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulation. (external link)
- Elise Aasebø; Even Birkeland; Frode Selheim et al. (2020). The extracellular bone marrow microenvironment — a proteomic comparison of constitutive protein release by in vitro cultured osteoblasts and mesenchymal stem cells. (external link)
- Ingvild Haaland; Marit Elisabeth Aardal; Frode Steingrimsen Berven et al. (2020). Changes in the induced sputum proteome during COPD exacerbations. (external link)
- Elise Aasebø; Frode Berven; Randi Hovland et al. (2020). The progression of acute myeloid leukemia from first diagnosis to chemoresistant relapse: A comparison of proteomic and phosphoproteomic profiles. (external link)
2007
- Frode Berven; Ann Cathrine Kroksveen; Magnus Foldal Berle et al. (2007). Pre-analytical influence on the low molecular weight cerebrospinal fluid proteome. (external link)
- Reidar Arneberg; Tarja Rajalahti; Kristian Flikka et al. (2007). Pretreatment of mass spectral profiles: Application to proteomic data. (external link)
- Sara Karolina Olausson; Frode Berven; Rune Johan Ulvik (2007). Proteomics applied on cerebrospinal fluid, with focus on methods development and candidate biomarker discovery in multiple sclerosis patients. (external link)
- Hiwa Målen; Frode Berven; Kari Espolin Fladmark et al. (2007). Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37Rv. (external link)
- Tarja Rajalahti; Reidar Arneberg; Kristian Flikka et al. (2007). Preteatment of Mass Spectral Profiles: Application to proteomic data. (external link)
- Olav Martin Kvalheim; Tarja Rajalahti; Reidar Arneberg et al. (2007). Analysis of Proteomic Profiles. (external link)
- Olav Martin Kvalheim; Tarja Rajalahti; Reidar Arneberg et al. (2007). Target projection and proper data pre-treatment for the analysis of proteomic profiles. (external link)
2012
- Thin Thin Aye; Teck Yew Low; Yngvild Bjørlykke et al. (2012). Use of stable isotope dimethyl labeling coupled to selected reaction monitoring to enhance throughput by multiplexing relative quantitation of targeted proteins. (external link)
- Gyri Teien Haugland; Anita Rønneseth; Frode Berven et al. (2012). Global proteomic analyses of fish leukocytes during pathogen infections.. (external link)
- Frode Berven; Heidrun Vethe; Frode Selheim (2012). Mass spectrometry-based proteomics of human cerebrospinal fluid. Biomarker discovery and verification in multiple sclerosis. (external link)
- Astrid Guldbransen; Frode Berven; Frode Selheim (2012). Glycoproteomics in Human Cerebrospinal Fluid Mapping the CSF Proteome, and Biomarker Discovery and Qualification in Multiple Sclerosis. (external link)
- Olav Mjaavatten; Gyrid Nygaard; Frode Berven et al. (2012). Minimization of side reactions during Lys Tag derivatization of C-terminal lysine peptides. (external link)
- Ann Cathrine Kroksveen; Astrid Guldbrandsen; Christian A. Vedeler et al. (2012). Cerebrospinal fluid proteome comparison between multiple sclerosis patients and controls. (external link)
2023
- Ahmed Samy Mohamed Ali Barakat; Even Birkeland; Melissa Davidsen Jørstad et al. (2023). Proteomic analysis of peripheral blood mononuclear cells isolated from patients with pulmonary tuberculosis: A pilot study from Zanzibar, Tanzania. (external link)
- Sushma Bartaula-Brevik; Calum Leitch; Maria del Carmen Hernandez Valladares et al. (2023). Vacuolar ATPase Is a Possible Therapeutic Target in Acute Myeloid Leukemia: Focus on Patient Heterogeneity and Treatment Toxicity. (external link)
2008
- Tarja Rajalahti; Reidar Arneberg; Frode Berven et al. (2008). Biomarker discovery from mass spectral profiles: A combined proteomics and multivariate analysis. (external link)
- Hiwa Målen; Frode Berven; Tina Søfteland et al. (2008). Membrane- and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies. (external link)
- Hiwa Målen; Frode Berven; Tina Søfteland et al. (2008). Membrane- and membrane associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies. (external link)
- Tarja Rajalahti; Reidar Arneberg; Frode Berven et al. (2008). Early diagnosis and biomarker discovery from mass spectral profiles: application to multiple sclerosis. (external link)
- Hiwa Målen; Frode Berven; Tina Søfteland et al. (2008). Membrane- and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies. (external link)
2004
- Frode Berven; Kristian Flikka; Harald B Jensen et al. (2004). BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. (external link)
- Anne Hege Straume; Harald B Jensen; Frode Berven et al. (2004). Methylococcus capsulatus (Bath); Molecular analyses of a surface exposed heteromultimeric protein complex. (external link)
2024
- Ole Bernt Lenning; Grete Jonsson; Tore Bjørn Grimstad et al. (2024). No signs of mast cell involvement in long-COVID: A case–control study. (external link)
- Betty M. Tijms; Ellen M. Vromen; Olav Mjaavatten et al. (2024). Cerebrospinal fluid proteomics in patients with Alzheimer’s disease reveals five molecular subtypes with distinct genetic risk profiles. (external link)
- Live Egeland Eidem; Even Birkeland; Marie Austdal et al. (2024). Fatigue in Parkinson's Disease: A Proteomic Study of Cerebrospinal Fluid. (external link)
- Ragnhild Reehorst Lereim; Petra Nytrova; Astrid Guldbrandsen et al. (2024). Natalizumab promotes anti-inflammatory and repair effects in multiple sclerosis. (external link)
2014
- Erik Helgeland; Lars Ertesvåg Breivik; Marc Vaudel et al. (2014). Exploring the human plasma proteome for humoral mediators of remote ischemic preconditioning - A word of caution. (external link)
- Elise Aasebø; Marc Vaudel; Olav Mjaavatten et al. (2014). Performance of super-SILAC based quantitative proteomics for comparison of different acute myeloid leukemia (AML) cell lines. (external link)
- Yngvild Bjørlykke; Heidrun Vethe; Marc Vaudel et al. (2014). Carboxyl-ester lipase maturity-onset diabetes of the young disease protein biomarkers in secretin-stimulated duodenal juice. (external link)
- Elise Aasebø; Jill Anette Opsahl; Yngvild Bjørlykke et al. (2014). Effects of blood contamination and the rostro-caudal gradient on the human cerebrospinal fluid proteome. (external link)
- Marc Vaudel; Harald Barsnes; Lennart Martens et al. (2014). Bioinformatics for Proteomics: Opportunities at the interface between the scientists, their experiments and the community. (external link)
- Astrid Guldbrandsen; Heidrun Vethe; Yehia Mohamed Mokhtar Farag et al. (2014). In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR). (external link)
- Kenneth Finne; Heidrun Vethe; Trude Skogstrand et al. (2014). Proteomic analysis of formalin-fixed paraffin-embedded glomeruli suggests depletion of glomerular filtration barrier proteins in two-kidney one-clip hypertensive rats. (external link)
- Ragnhild Reehorst Lereim; Eystein Oveland; Frode Berven (2014). Establishment and usage of quantitative brain proteomics to investigate the role of Peli1 E3 ubiquitin ligase in the EAE mouse model of multiple sclerosis. (external link)
- Elaheh Mahootchi; Ann Cathrine Kroksveen; Jill Anette Opsahl et al. (2014). Label-free proteomics analysis of plasma to discover proteins with differential abundance between multiple sclerosis patients and controls. (external link)
- Cheryl F. Lichti; Huiling Liu; Alexander S. Shavkunov et al. (2014). Integrated chromosome 19 transcriptomic and proteomic data sets derived from glioma cancer stem-cell lines. (external link)
- Marc Vaudel; A. Saskia Venne; Frode Berven et al. (2014). Shedding light on black boxes in protein identification. (external link)
- Ingvild Haaland; Jill Anette Opsahl; Frode Berven et al. (2014). Molecular mechanisms of nutlin-3 involve acetylation of p53, histones and heat shock proteins in acute myeloid leukemia. (external link)
2009
- Charlotte E. Teunissen; Andreas Petzold; Jeffrey L. Bennett et al. (2009). A consensus protocol for the standardization of cerebrospinal fluid collection and biobanking. (external link)
- Frode Berven (2009). Discovery of novel diagnostic biomarker candidates for multiple sclerosis through clinical proteomics. (external link)
- Hayrettin Tumani; Hans-Peter Hartung; Bernhard Hemmer et al. (2009). Cerebrospinal fluid biomarkers in multiple sclerosis. (external link)
- Tarja Rajalahti; Reidar Arneberg; Frode Berven et al. (2009). Biomarker discovery in mass spectral profiles by means of selectivity ratio plot. (external link)